68 dependents
| Package | Description | Downloads/month |
|---|---|---|
| CREsted is a Python package for training sequence-based deep learning models on ... | 62K | |
| A lite implementation of tfmodisco, a motif discovery algorithm for genomics exp... | 7K | |
| A scanpy extension to analyse single-cell TCR and BCR data. | 6K | |
| Combinatorial Library Analysis Suite: analysis of NGS data from genetically enco... | 6K | |
| Protein design | 6K | |
| Sequana: a set of Snakemake NGS pipelines | 6K | |
| Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data | 6K | |
| Testing with PCA projected Concept Activation Vectors | 5K | |
| ExpoSeq is a pipeline to process and analyze in various visualizations ngs data ... | 4K | |
| immuneML is a platform for machine learning analysis of adaptive immune receptor... | 4K | |
| gReLU is a python library to train, interpret, and apply deep learning models to... | 4K | |
| QC package for RNA-seq data. | 3K | |
| Wrapper around logomaker to easily render PSAMs in a variety of ways. | 3K | |
| Python framework for interpretable protein prediction | 1K | |
| A Toolbox for Proteomic Analyses and Data Visualization | 1K | |
| Transcription Factor MOtif Discovery from Importance SCOres | 1K | |
| Learning and Aligning Large Protein Families with support of protein language mo... | 1K | |
| A tool for short uORF annotation. | 1K | |
| Provide RNA and DNA Foundation Model Benchmarks and Applications | 1K | |
| Python drug discovery toolkit for Boltz2 structure and affinity prediction, Bolt... | 992 | |
| Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal | 977 | |
| Make sequence logos using Felsenstain's phylogenetically independent contrast me... | 960 | |
| Python library for immune repertoire analysis | 893 | |
| MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect | 878 | |
| Helping to integrate Spectral Predictors and Rescoring. | 793 | |
| Prolint2 is an optimized tool for analyzing and visualizing lipid-protein intera... | 773 | |
| A tool to process and analyze iTP-Seq datasets | 753 | |
| Import genomic data to get a Pandas & Biopython hybrid with fancy shortcuts to m... | 731 | |
| splicekit: comprehensive toolkit for splicing analysis from short-read RNA-seq | 645 | |
| CentriVision | 624 | |
| End-to-end workflow for de novo protein sequencing based on InstaNovo | 529 | |
| Transcription Factor Motif Instance Neighborhood Decomposition and Interpretatio... | 520 | |
| A modernized rewrite of RSeQC (RNA-seq Quality Control) | 430 | |
| Uncovering Stem-loop Motifs from RBP Binding Regions | 422 | |
| motif conservation in IDRs through pairwise k-mer alignment | 408 | |
| Browser-based GUI for the logomaker sequence logo package | 365 | |
| A tool for visualising kmers in 2D space. | 324 | |
| Transcription Factor MOtif Discovery from Importance SCOres - lite | 314 | |
| Base Editing screens' Activity-Normalized variant effect size estimation | 310 | |
| BoltzNet | 289 | |
| SHARK (Similarity/Homology Assessment by Relating K-mers) | 277 | |
| RRM-RNA score predictor | 273 | |
| A toolbox for detecting DNA replication origins and regulatory motifs in genomic... | 266 | |
| Framework for rapdily identifying immune responses through TCR neighborhood quan... | 263 | |
| An in silico perturbation framework to interpret large-scale genomic deep learni... | 259 | |
| Decombinator: fast, error-correcting analysis of TCR repertoires | 255 | |
| CNNAMON: a convolutiIonal neural network interpretability framework for deciphe... | 241 | |
| tcr_deep_insight | 226 | |
| Package allowing to annotate piRNAs clusters from RNA-seq datafiles | 220 | |
| sPYce is a Python package for the cross-species integration of single-nucleus AT... | 218 |
