55 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Python modules to work with large multiresolution images. | 195K | |
| PyTorch-based framework that handles segmentation/regression/classification usin... | 94K | |
| Computational Pathology Toolbox developed by TIA Centre, University of Warwick. | 32K | |
| 🔬 Python SDK providing access to the Aignostics Platform. Includes Aignostics La... | 15K | |
| Dlup are the Deep Learning Utilities for Pathology developed at the Netherlands ... | 12K | |
| TissUUmaps is a lightweight viewer that uses basic web tools to visualize gene e... | 10K | |
| Library for Digital Pathology Image Processing | 8K | |
| Efficient data structures and IO for whole slide image analysis | 3K | |
| Add your description here | 3K | |
| A library for efficient processing and analysis of whole-slide pathology images. | 3K | |
| Single Cell Extraction and Morphological Analysis of Whole Slide Images | 3K | |
| Conversion of medical images to MHA and TIFF. | 3K | |
| Evaluation and adaption method for the UNICORN Challenge | 2K | |
| Integrating transcriptional data to decipher the tumor microenvironment with the... | 2K | |
| Read and process histological slide images with python! | 2K | |
| Piecewise alignment for layers of mosaics | 2K | |
| PathoPatcher is a Python project designed for accelerating Whole Slide Image Pre... | 2K | |
| SPatial Analysis for CodEX data (SPACEc) | 1K | |
| 1K | ||
| Semi-automatic neuropathology analysis package for quantifying IHC WSI's | 1K | |
| Tools for computational pathology | 1K | |
| A Python package and CLI to view XML annotations and NumPy masks. | 770 | |
| A Python package for processing and handling whole slide images | 715 | |
| A package for extracting image patches from SVS files and performing color norma... | 665 | |
| Tool to visualize gigantic pathology images and use AI to segment cancer cells a... | 654 | |
| online histology annotation webapp | 625 | |
| Class for getting ROIs and masks from annotated pyramidal images. A work in prog... | 584 | |
| Robust quad-tree based registration on whole slide images | 544 | |
| Histomic Atlases of Variation Of Cancers (HAVOC) is a versatile tool that helps ... | 495 | |
| A lightweight, extensible toolkit for preprocessing and analyzing whole slide im... | 485 | |
| Toolkit for WSI Analysis | 434 | |
| c-pmat - a napari-based workflow for scale-independent quantification of the ext... | 419 | |
| SHELL Highlights Epithelium and Lumen Locations — whole-slide H&E segmentation | 398 | |
| procedures for wsi analysis | 361 | |
| Read/write functions to and from spatialdata for Deep Visual Proteomics | 360 | |
| A histopathology toolkit for working with whole slide images and their annotatio... | 346 | |
| HoVer-Net implementation fork | 333 | |
| Zebrafish blood smear cell counter | 332 | |
| 328 | ||
| 285 | ||
| Toolbox for histopathology image analysis | 275 | |
| A python package to quantitate liver histopathology in whole slide images. | 221 | |
| A python toolbox to split whole slide image. | 219 | |
| Histomic Atlases of Variation Of Cancers (HAVOC) is a versatile tool that helps ... | 205 | |
| Converts whole slide images to DICOM format | 180 | |
| Lab for quantitative bioimage analysis experiments in Python | 175 | |
| Computer vision-Based Antigen Target Selector | 150 | |
| 131 | ||
| Localize the tissue regions in whole slide pathology images. | 128 | |
| :microscope: Syntax - the arrangement of whole-slide-images and their image tile... | 128 |
