32 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Splicing-regulatory Driver Genes Identification Tool | 198K | |
| Calculate the enrichment scores of CRISPR alleles and variants from direct targe... | 6K | |
| A novel tool for linking peptide with taxonomic and functional information with ... | 4K | |
| Foli-seq data processing and analysis tools | 4K | |
| Official DeepLife Python toolkit on PyPI: TwinCell (`deeplife_toolkit.twincell`)... | 3K | |
| RNA 5' and 3' End Correction Tool with Intron Refinement and Ambiguity Resolutio... | 1K | |
| The self-evolving agentic framework for bioinformatics | 1K | |
| Detection of PatIent-Level distances from single cell genomics and pathomics dat... | 1K | |
| PROTRIDER - Protein outlier detection method | 1K | |
| A package for performing normalized single sample single -omic/ integrated multi... | 1K | |
| 848 | ||
| Performing differential testing on pseudobulked single-cell data | 806 | |
| A tool to process and analyze iTP-Seq datasets | 753 | |
| Hierarchical deconvolution of bulk transcriptomics | 637 | |
| Single-cell differential expression | 586 | |
| Extension of Differential Gene Expression testing to handle genome aneuploidy in... | 562 | |
| A Python package for perturbational single-cell data analysis | 556 | |
| IsoMarker | 412 | |
| Convenient and user-friendly package to streamline common workflows in single-ce... | 404 | |
| A statistically robust pipeline for building cell-cell graphs from single cell R... | 273 | |
| Spatial transcriptome analysis in python | 257 | |
| This package contains utilities to process TCGA data for fedpydeseq2. | 238 | |
| NetworkCommons is a community-driven platform designed to simplify access to too... | 196 | |
| scDistill: Knowledge distillation for single-cell batch correction with covariat... | 181 | |
| Single cell analysis using Low Resource | 157 | |
| single cell multi-omics data analysis toolkit | 136 | |
| Module for kinetic RNA-seq analysis. | 134 | |
| Support methods and classes for the Biodiversity studies on Mgnify metagenomes | 119 | |
| A probabilistic model for correcting mis-assigned transcripts due to cell segmen... | 115 | |
| This package is a SubstraFL implementation FL of PyDESeq2. | 111 | |
| Code for BetterCodeBetterScience book | 97 | |
| single cell multi-omics data analysis kit | 1 |
